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1

Computer design of microfluidic mixers for protein/RNA folding studies

Inguva, Venkatesh, Kathuria, Sagar V., Bilsel, Osman, Perot, Blair James, Dao, Ming

Journal:

Year:

2018

Language:

english

File:

PDF, 17.30 MB

english, 2018

2

In Situ Measurements of Polymer Micellization Kinetics with Millisecond Temporal Resolution

Kalkowski, Joseph, Liu, Chang, Leon-Plata, Paola, Szymusiak, Magdalena, Zhang, Pin, Irving, Thomas, Shang, Weifeng, Bilsel, Osman, Liu, Ying

Journal:

Year:

2019

Language:

english

File:

PDF, 2.47 MB

english, 2019

3

Minireview: Structural insights into early folding events using continuous-flow time-resolved small-angle X-ray scattering

Sagar V. Kathuria, Liang Guo, Rita Graceffa, Raul Barrea, R. Paul Nobrega, C. Robert Matthews, Thomas C. Irving, Osman Bilsel

Journal:

Year:

2011

Language:

english

File:

PDF, 1.20 MB

english, 2011

4

Electronic states and (π, π*) absorption and emission characteristics of strongly coupled porphyrin dimers: sandwich complexes of HfIV and ZrIV

Osman Bilsel, Johann W. Buchler, Peter Hammerschmitt, Juan Rodriguez, Dewey Holten

Journal:

Chemical Physics Letters

Year:

1991

Language:

english

File:

PDF, 638 KB

english, 1991

5

Octreotide in liver cirrhosis: a salvage for variceal bleeding can be a gunshot for kidneys

Deniz Güney Duman, Davut Tüney, Serpil Bilsel, Fehime Benli, Sehnaz Karan, Erol Avsar, Osman Özdogan, Nurdan Tözün

Journal:

Liver International

Year:

2005

Language:

english

File:

PDF, 158 KB

english, 2005

6

Fluorogenic probes for monitoring peptide binding to class II MHC proteins in living cells

Venkatraman, Prasanna, Nguyen, Tina T, Sainlos, Matthieu, Bilsel, Osman, Chitta, Sriram, Imperiali, Barbara, Stern, Lawrence J

Journal:

Nature Chemical Biology

Year:

2007

Language:

english

File:

PDF, 1.64 MB

english, 2007

7

The progressive development of structure and stability during the equilibrium folding of the α subunit of tryptophan synthase from Escherichia coli

Peter J. Gualfetti, Osman Bilsel, C. Robert Matthews

Journal:

Protein Science

Year:

1999

Language:

english

File:

PDF, 1014 KB

english, 1999

8

Molecular dimensions and their distributions in early folding intermediates

Osman Bilsel, C Robert Matthews

Journal:

Current Opinion in Structural Biology

Year:

2006

Language:

english

File:

PDF, 304 KB

english, 2006

9

SecA Folding Kinetics: A Large Dimeric Protein Rapidly Forms Multiple Native States

Shannon M. Doyle, Osman Bilsel, Carolyn M. Teschke

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 544 KB

english, 2004

10

Mapping the Folding Free Energy Surface for Metal-free Human Cu,Zn Superoxide Dismutase

Anna-Karin E. Svensson, Osman Bilsel, Elena Kondrashkina, Jill A. Zitzewitz, C. Robert Matthews

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 1.92 MB

english, 2006

11

Microsecond Hydrophobic Collapse in the Folding of Escherichia coli Dihydrofolate Reductase, an α/β-Type Protein

Munehito Arai, Elena Kondrashkina, Can Kayatekin, C. Robert Matthews, Masahiro Iwakura, Osman Bilsel

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 966 KB

english, 2007

12

Topology and Sequence in the Folding of a TIM Barrel Protein: Global Analysis Highlights Partitioning between Transient Off-pathway and Stable On-pathway Folding Intermediates in the Complex Folding Mechanism of a (βα)8 Barrel of Unknown Function from B. subtilis

William R. Forsyth, Osman Bilsel, Zhenyu Gu, C. Robert Matthews

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.58 MB

english, 2007

13

The Folding Free-Energy Surface of HIV-1 Protease: Insights into the Thermodynamic Basis for Resistance to Inhibitors

Amanda F. Noel, Osman Bilsel, Agnita Kundu, Ying Wu, Jill A. Zitzewitz, C. Robert Matthews

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 1.53 MB

english, 2009

14

Microsecond Subdomain Folding in Dihydrofolate Reductase

Munehito Arai, Masahiro Iwakura, C. Robert Matthews, Osman Bilsel

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.55 MB

english, 2011

15

Electronic states and optical properties of porphyrins in van der Waals contact: thorium(IV) sandwich complexes

Bilsel, Osman, Rodriguez, Juan, Milam, Stanley N., Gorlin, Philip A., Girolami, Gregory S., Suslick, Kenneth S., Holten, Dewey

Journal:

Journal of the American Chemical Society

Year:

1992

Language:

english

File:

PDF, 1.36 MB

english, 1992

16

Apparent Radii of the Native, Stable Intermediates and Unfolded Conformers of the α-Subunit of Tryptophan Synthase from E. coli, a TIM Barrel Protein †

Gualfetti, Peter J., Iwakura, Masahiro, Lee, J. Ching, Kihara, Hiroshi, Bilsel, Osman, Zitzewitz, Jill A., Matthews, C. Robert

Journal:

Year:

1999

Language:

english

File:

PDF, 199 KB

english, 1999

17

Engineering the Upconversion Nanoparticle Excitation Wavelength: Cascade Sensitization of Tri-doped Upconversion Colloidal Nanoparticles at 800 nm

Shen, Jie, Chen, Guanying, Vu, Anne-Marie, Fan, Wei, Bilsel, Osman S., Chang, Chun-Chih, Han, Gang

Journal:

Advanced Optical Materials

Year:

2013

Language:

english

File:

PDF, 1.35 MB

english, 2013

18

Picosecond relaxation of strongly coupled porphyrin dimers

Bilsel, Osman., Rodriguez, Juan., Holten, Dewey.

Journal:

Journal of Physical Chemistry

Year:

1990

Language:

english

File:

PDF, 707 KB

english, 1990

19

Ultrafast electronic deactivation and vibrational dynamics of photoexcited uranium(IV) porphyrin sandwich complexes

Bilsel, Osman, Milam, Stanley N., Girolami, Gregory S., Suslick, Kenneth S., Holten, Dewey

Journal:

Journal of Physical Chemistry

Year:

1993

Language:

english

File:

PDF, 744 KB

english, 1993

20

Observing and Characterizing Early Folding Intermediates of E.Coli Rnase H using Kinetic and Equilibrium Approaches

Rosen, Laura E., Kathuria, Sagar, Connell, Katelyn, Bilsel, Osman, Matthews, C. Robert, Marqusee, Susan

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 47 KB

english, 2014

21

Microsecond Barrier-Limited Chain Collapse Observed by Time-Resolved FRET and SAXS

Kathuria, Sagar V., Kayatekin, Can, Barrea, Raul, Kondrashkina, Elena, Graceffa, Rita, Guo, Liang, Nobrega, R. Paul, Chakravarthy, Srinivas, Matthews, C. Robert, Irving, Thomas C., Bilsel, Osman

Journal:

Journal of Molecular Biology

Year:

2014

Language:

english

File:

PDF, 1.32 MB

english, 2014

22

Probing the Folding Mechanism of a Leucine Zipper Peptide by Stopped-Flow Circular Dichroism Spectroscopy

Zitzewitz, Jill A., Bilsel, Osman, Luo, Jiabin, Jones, Bryan E., Matthews, C. Robert

Journal:

Year:

1995

Language:

english

File:

PDF, 971 KB

english, 1995

23

SAXS/SANS Probe of Intermolecular Interactions in Concentrated Protein Solutions

Zhou, Huan-Xiang, Bilsel, Osman

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 816 KB

english, 2014

24

[Advances in Protein Chemistry] Protein folding mechanisms Volume 53 || Barriers in protein folding reactions

Year:

2000

Language:

english

File:

PDF, 3.07 MB

english, 2000

25

Folding Mechanism of the α-Subunit of Tryptophan Synthase, an α/β Barrel Protein: Global Analysis Highlights the Interconversion of Multiple Native, Intermediate, and Unfolded Forms through Parallel Channels †

Bilsel, Osman, Zitzewitz, Jill A., Bowers, Katherine E., Matthews, C. Robert

Journal:

Year:

1999

Language:

english

File:

PDF, 146 KB

english, 1999

26

Native State Conformational Heterogeneity of HP35 Revealed by Time-Resolved FRET

Serrano, Arnaldo L., Bilsel, Osman, Gai, Feng

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 1.20 MB

english, 2012

27

Observation of a new low-energy fluorescent 1(.pi.,.pi.*) excited state in strongly coupled porphyrin dimers

Bilsel, Osman, Rodriguez, Juan, Holten, Dewey, Girolami, Gregory S., Milam, Stanley M., Suslick, Kenneth S.

Journal:

Journal of the American Chemical Society

Year:

1990

Language:

english

File:

PDF, 465 KB

english, 1990

28

Time-Resolved Fluorescence Anisotropy Study of the Refolding Reaction of the α-Subunit of Tryptophan Synthase Reveals Nonmonotonic Behavior of the Rotational Correlation Time †

Bilsel, Osman, Yang, Li, Zitzewitz, Jill A., Beechem, Joseph M., Matthews, C. Robert

Journal:

Year:

1999

Language:

english

File:

PDF, 153 KB

english, 1999

29

Cytotoxic Activity and Essential Oil Composition of Leaves and Berries of Juniperus excelsa .

Topçu, Gülaçtu, Gören, Ahmet C., Bilsel, Gökhan, Bilsel, Mine, Çakmak, Osman, Schilling, Jennifer, Kingston, David G.I.

Journal:

Pharmaceutical Biology

Year:

2005

Language:

english

File:

PDF, 75 KB

english, 2005

30

Advances in turbulent mixing techniques to study microsecond protein folding reactions

Kathuria, Sagar V., Chan, Alexander, Graceffa, Rita, Paul Nobrega, R., Robert Matthews, C., Irving, Thomas C., Perot, Blair, Bilsel, Osman

Journal:

Year:

2013

Language:

english

File:

PDF, 325 KB

english, 2013

31

A microchannel solution mixer for studying microsecond protein folding reactions

Bilsel, Osman, Kayatekin, Can, Wallace, Louise A., Matthews, C. Robert

Journal:

Review of Scientific Instruments

Year:

2005

Language:

english

File:

PDF, 932 KB

english, 2005

32

Non-Native Structure Appears in Microseconds during the Folding of E. coli RNase H

Rosen, Laura E., Kathuria, Sagar V., Matthews, C. Robert, Bilsel, Osman, Marqusee, Susan

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 835 KB

english, 2015

33

Sub-millisecond time-resolved SAXS using a continuous-flow mixer and X-ray microbeam

Graceffa, Rita, Nobrega, R. Paul, Barrea, Raul A., Kathuria, Sagar V., Chakravarthy, Srinivas, Bilsel, Osman, Irving, Thomas C.

Journal:

Journal of Synchrotron Radiation

Year:

2013

Language:

english

File:

PDF, 496 KB

english, 2013

34

Methods for analysis of size-exclusion chromatography–small-angle X-ray scattering and reconstruction of protein scattering

Malaby, Andrew W., Chakravarthy, Srinivas, Irving, Thomas C., Kathuria, Sagar V., Bilsel, Osman, Lambright, David G.

Journal:

Journal of Applied Crystallography

Year:

2015

Language:

english

File:

PDF, 1.44 MB

english, 2015

35

Tailoring dye-sensitized upconversion nanoparticle excitation bands towards excitation wavelength selective imaging

Wu, Xiang, Lee, Hyungseok, Bilsel, Osman, Zhang, Yuanwei, Li, Zhanjun, Chen, Teresa, Liu, Yi, Duan, Chunying, Shen, Jie, Punjabi, Amol, Han, Gang

Journal:

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

36

Selenomethionine, p-cyanophenylalanine pairs provide a convenient, sensitive, non-perturbing fluorescent probe of local helical structure

Peran, Ivan, Watson, Matthew D., Bilsel, Osman, Raleigh, Daniel P.

Journal:

Chemical Communications

Year:

2016

Language:

english

File:

PDF, 1.96 MB

english, 2016

37

Dye Sensitized Core/ Active Shell Upconversion Nanoparticles for Optogenetics and Bioimaging Applications

Wu, Xiang, Zhang, Yuanwei, Takle, Kendra, Bilsel, Osman, Li, Zhanjun, Lee, Hyungseok, zhang, zijiao, li, dongsheng, fan, wei, Duan, Chunying, Chan, Emory M., lois, carlos, Xiang, Yang, Han, Gang

Journal:

Year:

2016

Language:

english

File:

PDF, 799 KB

english, 2016

38

Sequential Closure of Loop Structures Forms the Folding Nucleus during the Refolding Transition of the Escherichia coli Adenylate Kinase Molecule

Orevi, Tomer, Rahamim, Gil, Amir, Dan, Kathuria, Sagar, Bilsel, Osman, Matthews, C. Robert, Haas, Elisha

Journal:

Year:

2016

Language:

english

File:

PDF, 1.49 MB

english, 2016

39

Fast Closuer of Long Loops at the Initiation of a Protein Folding Pathway

Haas, Elisha, Amir, Dan, Orevi, Tomer, Rahamim, Gil, Kathuria, Sagar, Matthews, Robert C., Bilsel, Osman

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 48 KB

english, 2016

40

SPIE Proceedings [SPIE Optics East 2007 - Boston, MA (Sunday 9 September 2007)] Advanced Photon Counting Techniques II - Merging microsecond mixing and time-correlated single-photon counting: using time-resolved FRET and time-resolved anisotropy to probe early events in protein folding

Bilsel, Osman, Becker, Wolfgang, Wu, Ying, Kayatekin, Can, Matthews, C. Robert

Year:

2007

Language:

english

File:

PDF, 460 KB

english, 2007

41

Metal-Free ALS Variants of Dimeric Human Cu,Zn-Superoxide Dismutase Have Enhanced Populations of Monomeric Species

Svensson, Anna-Karin E., Bilsel, Osman, Kayatekin, Can, Adefusika, Jessica A., Zitzewitz, Jill A., Matthews, C. Robert, Hofmann, Andreas

Journal:

Year:

2010

Language:

english

File:

PDF, 1.22 MB

english, 2010

42

Selenomethionine Quenching of Tryptophan Fluorescence Provides a Simple Probe of Protein Structure

Watson, Matthew D., Peran, Ivan, Zou, Junjie, Bilsel, Osman, Raleigh, Daniel P.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.07 MB

english, 2017

43

Simulations and Experiments Provide a Convergent View of Protein Unfolded States under Folding Conditions

Holehouse, Alex S., Perana, Ivan, Carrico, Isaac S., Bilsel, Osman, Raleigh, Daniel P., Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 43 KB

english, 2017

44

Atomistic structural ensemble refinement reveals non-native structure stabilizes a sub-millisecond folding intermediate of CheY

Shi, Jade, Nobrega, R. Paul, Schwantes, Christian, Kathuria, Sagar V., Bilsel, Osman, Matthews, C. Robert, Lane, T. J., Pande, Vijay S.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.16 MB

english, 2017

45

Examination of the Oligomerization Mechanism of SOD1 In Vitro and in Live Cells

Mackness, Brian C., Cohen, Noah R., Matthews, C. Robert, Zitzewitz, Jill A., Bilsel, Osman

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 43 KB

english, 2017

46

Microfluidic Turbulent Mixers, Time Resolved SAXS and Folding Intermediates of CheY

Kathuria, Sagar V., Bilsel, Osman, Chakravarthy, Srinivas, Matthews, C Robert

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 39 KB

english, 2017

47

Structural Dynamics Control Allosteric Activation of Cytohesin Family Arf GTPase Exchange Factors

Malaby, Andrew W., Das, Sanchaita, Chakravarthy, Srinivas, Irving, Thomas C., Bilsel, Osman, Lambright, David G.

Journal:

Year:

2018

Language:

english

File:

PDF, 5.85 MB

english, 2018

48

1P106 Submillisecond Folding of Escherichia coli Dihydrofolate Reductase Monitored by Time-Resolved Fluorescence Spectroscopy(3. Protein folding and misfolding (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Arai, Munehito, Iwakura, Masahiro, Matthews, C. Robert, Bilsel, Osman

Journal:

Seibutsu Butsuri

Year:

2006

Language:

english

File:

PDF, 159 KB

english, 2006

49

High-speed velocimetry in microfluidic protein mixers using confocal fluorescence decay microscopy

Inguva, Venkatesh, Rothstein, Jonathan P., Bilsel, Osman, Perot, Blair J.

Journal:

Experiments in Fluids

Year:

2018

Language:

english

File:

PDF, 6.89 MB

english, 2018

50

Protein Unfolded States are Characterized by the Duality of Sequence-Specific Conformational Preferences and Ensemble-Averaged Features of Canonical Random Coils

Holehouse, Alex S., Peran, Ivan, Stenzoski, Natalie E., Zou, Junjie, Piserchio, Andrea, Ghose, Ranajeet, Carrico, Isaac S., Bilsel, Osman, Raleigh, Daniel P., Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2019

File:

PDF, 65 KB

2019

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